Introduction | 1. uk_patient_id() function | Input Requirements | Example usage | 2. group_time() function | Purpose | Using uk_patient_id() and group_time() together with SGSS and CIMS data

Introduction | Prerequisites | Example 1: Basic epi curve with rolling average | Create the basic epi curve | Example 2: Grouped epi curve with stacked bars | Create the grouped epi curve | Example 3: Daily epi curve with case boxes and cumulative line | Create the detailed daily epi curve | Example 4: Pre-aggregated data with rolling and cumulative lines | Prepare pre-aggregated data | Create the pre-aggregated epi curve | Example 5: Interactive grouped epi curve | Create the interactive grouped epi curve | Tips for epi curves

Introduction | Prerequisites | Example 1: Single time series without grouping | Prepare the data | Create the single time series line chart | Example 2: Multiple time series with grouping | Prepare the grouped data | Create the multiple time series line chart | Example 3: Interactive multiple time series | Create the interactive line chart | Example 4: Custom styled line chart with enhanced formatting | Prepare data for enhanced styling | Create the enhanced line chart | Tips for line charts

Introduction | Prerequisites | Environment Setup | Required Environment Variables | Verify Setup | Example 1: Interpreting an epidemic curve | Prepare the data and create a visualization | Interpret the visualisation | Example 2: Custom interpretation with specific focus | Interpret with custom epidemiological focus | Tips for LLM interpretation | Troubleshooting | Common Issues

Introduction | Prerequisites | Example 1: Basic point chart | Prepare the data | Create the basic point chart | Example 2: Interactive point chart | Create the interactive point chart | Example 3: Grouped point chart with confidence ribbons | Prepare grouped data with confidence intervals | Create the grouped point chart with confidence ribbons | Example 4: Point chart with threshold lines | Create the point chart with threshold lines | Example 5: Interactive grouped point chart with all features | Create the comprehensive interactive point chart | Tips for point charts

Introduction | Prerequisites | Example 1: Static map with un-merged shapefile | Prepare the data | Create the static map with un-merged shapefile | Example 2: Static map with pre-merged shapefile | Prepare the pre-merged data | Create the static map with pre-merged data | Example 3: Static map with border shapefile | Create the map with border shapefile | Example 4: Interactive map with un-merged shapefile | Create the interactive map | Example 5: Interactive map with border shapefile and area labels | Create the interactive map with borders and labels | Tips for epidemiological maps

Introduction | Prerequisites | Example 1: Static pyramid from line-list data | Prepare the line-list data | Plot the static pyramid | Example 2: Interactive grouped pyramid with confidence intervals | Aggregate counts and calculate confidence intervals | Plot the interactive grouped pyramid | Tips for age-sex pyramids

Introduction | Prerequisites | Example 1: Basic single-series column chart | Prepare the data | Create the basic column chart | Example 2: Grouped stacked column chart | Create the grouped stacked chart | Example 3: Column chart with bar labels | Create the chart with bar labels | Example 4: Interactive column chart with case boxes | Prepare data for case boxes | Create the interactive chart with case boxes | Example 5: Column chart with threshold lines | Create the chart with threshold lines | Example 6: Time-series column chart | Prepare the time-series data | Create the time-series column chart | Tips for column charts

Introduction | Prerequisites | The lab_data dataset | Example 1: Regional distribution of detections | Prepare the data | Create the visualization | Example 2: Temporal trends in detections | Tips for getting started | Next steps